Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,867,125 bacterial strains
senterica Image

Salmonella

Total strains: 815,624

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
ecoli Image

Escherichia/Shigella

Total strains: 478,218

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
mycobacterium Image

Mycobacterium tuberculosis

Total strains: 222,797

Assemblies in progress: 43

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
streptococcus Image

Streptococcus

Total strains: 185,021

Schemes: cgMLSTv1
enterococcus Image

Enterococcus

Total strains: 61,780

Assemblies in progress: 0

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 40,398

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 27,704

Schemes: rMLST, Vibrio cgMLST + HierCC
helicobacter Image

Helicobacter

Total strains: 18,851

Schemes: rMLST
yersinia Image

Yersinia

Total strains: 13,736

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
mcatarrhalis Image

Moraxella

Total strains: 2,996

Schemes: rMLST, Achtman 7 Gene